PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31896_BGI-A2_v1.0
Common NameF383_05194
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 307aa    MW: 34140.9 Da    PI: 7.3785
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31896_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702228.21.5e-70832422154
                      DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel....k 79 
                                 r+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++++++ + + +kr++e+     
  Cotton_A_31896_BGI-A2_v1.0  83 RQGGINCQDCGNQAKKDCLHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQQQEEQHQfRGEIPKRQKENqggvV 165
                                 67999****************************************************99998887767788888888867766 PP

                      DUF702  80 skkqsalsstklssae..skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                  +   +l++t+ls ++  +++ le  ++P+evss+avfrcv+vs++dd +ee+aYqtav+i+GhvfkGiLydqG+e+
  Cotton_A_31896_BGI-A2_v1.0 166 VTDVPSLACTRLSPTTttTTSGLELGQFPPEVSSQAVFRCVKVSAMDDVDEEFAYQTAVNIAGHVFKGILYDQGPES 242
                                 677778888888755400455677888************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.2E-6686241IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.7E-2788130IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.6E-26192240IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAGFFYLTGN KQEDKEESLH LYRNEEIYNS NNKGFEIWPQ YYYQQPQQAN VVSSTYPFGT  60
GPSRRTIGGG FNLSDESSSS RLRQGGINCQ DCGNQAKKDC LHLRCRTCCK SRGFQCQTHV  120
KSTWVPAAKR RERQQQLATL QQQEEQHQFR GEIPKRQKEN QGGVVVTDVP SLACTRLSPT  180
TTTTTSGLEL GQFPPEVSSQ AVFRCVKVSA MDDVDEEFAY QTAVNIAGHV FKGILYDQGP  240
ESRYTGGGSG SRENSEQQQQ LNLMADTTTT AMATSSNIGT NMLDPSVYPA PINAFIAGTQ  300
FFPHPRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5838951e-127JX583895.1 Gossypium hirsutum clone NBRI_GE17047 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452264.10.0PREDICTED: protein SHI RELATED SEQUENCE 7-like
SwissprotQ9LQZ54e-88SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A0B0NGN10.0A0A0B0NGN1_G
STRINGPOPTR_0002s03000.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.15e-71SHI-related sequence 5